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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69586895_69588432_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69586895 - 69588432
Intron Length:
1538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCATAT
U12 Branch Point Sequence:
CATATCTTAACT
Flanking Amino Acid:
SSTKGTYFPPILNPPPSPAT
Intron Amino Acid Position:
1477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72
39.5
Major BPS
74.2
0.6
1
69.3
38.4
Major PPT
84.5
0.78
0.6
84.9
22.8
Minor 5ss
38.1
-1.3
3.1
55.9
42.3
Minor BPS
73.4
0.81
1.3
81.58
39.8

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382