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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6959183_6959806_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6959183 - 6959806
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTGTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGGGTATTAACC
Flanking Amino Acid:
GTLQTFEILPSFHLQPTGTP
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
85.8
0.81
0.8
81.2
30.8
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
54.5
0.12
1.7
63.69
41.8

Associated Gene:

Gene:
DMTF1
Ensembl Gene ID:
ENSAPLG00000009042
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032608
6955743 - 6976404
20662
ENSAPLT00000009434
6953998 - 6976486
22489
ENSAPLT00000036689
6954678 - 6976486
21809
ENSAPLT00000035017
6954678 - 6977951
23274