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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_696036_696682_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
696036 - 696682
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
AATCCTATAAGG
Flanking Amino Acid:
GLHVFLWWLLGIAALTFALL
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74
36.6
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
77.9
0.63
0.9
68.7
42
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
46.9
-0.3
1.9
53.53
41

Associated Gene:

Gene:
SLC35B4
Ensembl Gene ID:
ENSAPLG00000005885
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006109
693025 - 703911
10887