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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69615502_69616435_R

Intron Information:

Intron Rank:
89503
Intron Class:
major
Intron Phase:
Intron Coordinates:
69615502 - 69616435
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.6
0.82
0.8
84.3
29.1
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012096
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012592
69615398 - 69619793
4396