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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6962416_6964334_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6962416 - 6964334
Intron Length:
1919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGTAC
5'SS Class:
major
3'SS Sequence:
TTCTTTCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CGTGCTTTAGCA
Flanking Amino Acid:
IANHKDVSFPVLIKGLKQLH
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.6
35.8
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
88.8
0.87
0.6
88.2
21.6
Minor 5ss
37.2
-1.4
3.3
46.7
43.5
Minor BPS
54.7
0.14
1.7
63.5
43.2

Associated Gene:

Gene:
DMTF1
Ensembl Gene ID:
ENSAPLG00000009042
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032608
6955743 - 6976404
20662
ENSAPLT00000009434
6953998 - 6976486
22489
ENSAPLT00000037691
6954678 - 6976486
21809
ENSAPLT00000035017
6954678 - 6977951
23274