About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6964487_6966167_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6964487 - 6966167
Intron Length:
1681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTGT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAGTTTCTAACA
Flanking Amino Acid:
TKEDEINLILRIAELEVSDE
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
72.6
39.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
77
0.61
1
76.7
37.4
Minor 5ss
44.4
-0.6
2.5
59.5
44.9
Minor BPS
58.8
0.27
1.6
68.58
37.8

Associated Gene:

Gene:
DMTF1
Ensembl Gene ID:
ENSAPLG00000009042
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009434
6953998 - 6976486
22489
ENSAPLT00000037691
6954678 - 6976486
21809
ENSAPLT00000036689
6954678 - 6976486
21809
ENSAPLT00000035017
6954678 - 6977951
23274
ENSAPLT00000032608
6955743 - 6976404
20662