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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6968460_6969234_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6968460 - 6969234
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
ACCTGTCGCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTACCT
Flanking Amino Acid:
RMYDDRNHVGKYTPQEIEKL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
72.4
32
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
58.5
0.19
0.9
50.2
38.7
Minor 5ss
40.6
-1.1
2.8
48.8
41.6
Minor BPS
68
0.64
1.8
88.66
36.3

Associated Gene:

Gene:
DMTF1
Ensembl Gene ID:
ENSAPLG00000009042
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036689
6954678 - 6976486
21809
ENSAPLT00000035017
6954678 - 6977951
23274
ENSAPLT00000032608
6955743 - 6976404
20662
ENSAPLT00000009434
6953998 - 6976486
22489
ENSAPLT00000037691
6954678 - 6976486
21809