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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69685421_69688196_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
69685421 - 69688196
Intron Length:
2776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGAAAAAATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAAAA
Flanking Amino Acid:
GLARLWGNHKNRTNMTYEKM
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
53.7
0.08
1.1
50.4
46
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
58.3
0.26
1.5
68.73
37.7

Associated Gene:

Gene:
ETV6
Ensembl Gene ID:
ENSAPLG00000011986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012479
69681462 - 69824778
143317