Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69688340_69708727_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

69688340 - 69708727

Intron Length:

20388

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

TCTCTCTTCACA

Flanking Amino Acid:

DHAMPIGRIADCRLLWDYVY

Intron Amino Acid Position:

336

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

75.8

34.3

Major BPS

71.6

0.54

33.1

Major PPT

84.2

0.77

0.7

79.2

26.3

Minor 5ss

32.5

-2

3.1

35.2

41.4

Minor BPS

61.5

0.36

1.8

72.02

40.3

Associated Gene:

Gene:

ETV6

Ensembl Gene ID:

ENSAPLG00000011986

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012479

69681462 - 69824778

143317