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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6969393_6970641_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6969393 - 6970641
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
LMSNIERYLKARGIKDATEI
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.9
0.63
0.8
70.5
36
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
DMTF1
Ensembl Gene ID:
ENSAPLG00000009042
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035017
6954678 - 6977951
23274
ENSAPLT00000032608
6955743 - 6976404
20662
ENSAPLT00000009434
6953998 - 6976486
22489
ENSAPLT00000037691
6954678 - 6976486
21809
ENSAPLT00000036689
6954678 - 6976486
21809