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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6970719_6973656_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6970719 - 6973656
Intron Length:
2938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTGCTGACTT
Flanking Amino Acid:
KEDKDSLTNKGHKWKQGMWS
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.5
0.64
1
82.8
32.6
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
53.6
0.19
2.1
80.5
41.8

Associated Gene:

Gene:
DMTF1
Ensembl Gene ID:
ENSAPLG00000009042
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032608
6955743 - 6976404
20662
ENSAPLT00000009434
6953998 - 6976486
22489
ENSAPLT00000037691
6954678 - 6976486
21809
ENSAPLT00000036689
6954678 - 6976486
21809
ENSAPLT00000035017
6954678 - 6977951
23274