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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69709271_69714012_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69709271 - 69714012
Intron Length:
4742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
ATGATATAAACT
Flanking Amino Acid:
EVLLHQNHDEDNFVQRPSRP
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.7
44.5
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
43.4
-0.7
2.9
58.6
45.9
Minor BPS
48.2
-0
1.9
67.83
42.8

Associated Gene:

Gene:
ETV6
Ensembl Gene ID:
ENSAPLG00000011986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012479
69681462 - 69824778
143317