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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69718086_69775810_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69718086 - 69775810
Intron Length:
57725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
CTTCCTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
AGTTTTGTAACG
Flanking Amino Acid:
EDTIRLPAHLRLQPVYWSRD
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
66.6
39.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
74.2
0.55
0.8
68.7
31.6
Minor 5ss
32.7
-2
3.3
39
39.9
Minor BPS
51.8
-0
2.1
61.63
40.7

Associated Gene:

Gene:
ETV6
Ensembl Gene ID:
ENSAPLG00000011986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012479
69681462 - 69824778
143317