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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6975770_6976287_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6975770 - 6976287
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGAAT
5'SS Class:
major
3'SS Sequence:
GTTTTGTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TAAACAGAAAGT
Flanking Amino Acid:
GNLILHCPQNETDEVDSEDS
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
73.1
37.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
73.2
0.52
1
73.5
41.9
Minor 5ss
40.2
-1.1
3.2
53.5
45
Minor BPS
37
-0.9
2.5
55.92
45.5

Associated Gene:

Gene:
DMTF1
Ensembl Gene ID:
ENSAPLG00000009042
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035017
6954678 - 6977951
23274
ENSAPLT00000032608
6955743 - 6976404
20662
ENSAPLT00000009434
6953998 - 6976486
22489
ENSAPLT00000037691
6954678 - 6976486
21809
ENSAPLT00000036689
6954678 - 6976486
21809