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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_698568_699428_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
698568 - 699428
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
AMPLHMIFRSGSLIASMALG
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
29
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
86.4
0.82
0.7
79.8
32.1
Minor 5ss
36.7
-1.5
3
52.2
44.4
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
SLC35B4
Ensembl Gene ID:
ENSAPLG00000005885
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006109
693025 - 703911
10887