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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69857295_69857391_F

Intron Information:

Intron Rank:
131887
Intron Class:
major
Intron Phase:
Intron Coordinates:
69857295 - 69857391
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGT
5'SS Class:
major
3'SS Sequence:
TTTGTATTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAGTTTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68
43.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82.5
0.73
0.8
77.3
36
Minor 5ss
29.9
-2.3
3.8
46.9
48.5
Minor BPS
61.4
0.44
1.7
77.22
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020798
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027350
69853878 - 69857867
3990