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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69864990_69865559_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69864990 - 69865559
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATT
5'SS Class:
strong_major
3'SS Sequence:
ACCTTCTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGATGTTTACCT
Flanking Amino Acid:
LPAGARGKDEGKKDDSSANI
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.2
33.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.3
0.43
0.9
69.5
36.2
Minor 5ss
44.3
-0.6
3.2
65.5
45.8
Minor BPS
52.4
0.15
2
73.14
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011338
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011861
69858809 - 69881113
22305