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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69865662_69867907_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69865662 - 69867907
Intron Length:
2246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
GATCTCATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GAACTCTTGACT
Flanking Amino Acid:
FYVWKYCKHNDKCRSIHYHL
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
69.8
0.45
0.9
62.6
38.1
Minor 5ss
43.9
-0.7
3.2
62.5
43.1
Minor BPS
62.9
0.49
1.3
71.03
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011338
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011861
69858809 - 69881113
22305