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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69868032_69869160_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69868032 - 69869160
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTACTATAATA
Flanking Amino Acid:
EKAYCDPKMNSIADKNINFQ
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
49.3
-0
2.5
64.8
46.5
Minor BPS
64.5
0.45
1.6
77
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011338
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011861
69858809 - 69881113
22305