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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69872035_69872560_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69872035 - 69872560
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCATT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTCCTTTTCC
Flanking Amino Acid:
GLYGYQLNFKEMTQTNIYSK
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
74.8
41.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
85.6
0.8
0.6
78.7
30.2
Minor 5ss
44.3
-0.6
3.2
66.6
44.3
Minor BPS
49.2
-0
3.6
82.88
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011338
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011861
69858809 - 69881113
22305