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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69873148_69876842_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
69873148 - 69876842
Intron Length:
3695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTAT
5'SS Class:
weak_major
3'SS Sequence:
TTATATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTATATTTTATA
Flanking Amino Acid:
PFDLSDLKYKAVEISNTSSE
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.7
34.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
81.7
0.71
0.8
76.9
36.8
Minor 5ss
62.3
0.41
2.1
75.5
40.6
Minor BPS
54.2
0.12
1.8
68.78
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011338
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011861
69858809 - 69881113
22305