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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69876974_69880036_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69876974 - 69880036
Intron Length:
3063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TGTCCCATACTG
Flanking Amino Acid:
QNPSLWKVFQWKKEQMKKEA
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.1
84.7
32.3
Major BPS
65
0.37
1.3
76.1
38
Major PPT
79.6
0.67
0.9
81.2
30.8
Minor 5ss
38.2
-1.3
2.8
50.3
39.9
Minor BPS
48.3
-0.2
2
58.75
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011338
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011861
69858809 - 69881113
22305