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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69880189_69880829_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69880189 - 69880829
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAGG
5'SS Class:
major
3'SS Sequence:
TACCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTTTTTTACCT
Flanking Amino Acid:
CGSNGANYGKGSYFARDASY
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65.3
46
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80
0.68
0.8
73
37
Minor 5ss
40.8
-1
2.5
42.3
44.6
Minor BPS
68.3
0.65
1.6
83.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011338
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011861
69858809 - 69881113
22305