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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69887983_69888277_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69887983 - 69888277
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTGCTAACT
Flanking Amino Acid:
LIQLGGSNAQRDVFNQLLIH
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
59.4
0.37
2.3
88.18
37

Associated Gene:

Gene:
TTC38
Ensembl Gene ID:
ENSAPLG00000010920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011412
69886004 - 69910334
24331