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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69888438_69893429_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69888438 - 69893429
Intron Length:
4992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AGTTCATCACTT
Flanking Amino Acid:
ELLTTLQELAKAPGEDHELS
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
88.5
0.87
0.6
83.5
24.9
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
47.5
-0.1
2
68.89
41.9

Associated Gene:

Gene:
TTC38
Ensembl Gene ID:
ENSAPLG00000010920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011412
69886004 - 69910334
24331