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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69895261_69896127_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69895261 - 69896127
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAGG
5'SS Class:
major
3'SS Sequence:
CCTGTGATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
AGCTTATGAATA
Flanking Amino Acid:
EAALTIYDNHIAPQCLSSGS
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.8
41
Major BPS
75.5
0.63
1
66
40.9
Major PPT
72.7
0.51
1
64.7
40.2
Minor 5ss
32.1
-2
2.7
38
39.9
Minor BPS
48
-0.1
1.7
56.25
36.7

Associated Gene:

Gene:
TTC38
Ensembl Gene ID:
ENSAPLG00000010920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011412
69886004 - 69910334
24331