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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69896167_69897263_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69896167 - 69897263
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTCTCTACCT
Flanking Amino Acid:
WHWALYFIEKGEYEAALTIY
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.2
32.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83.1
0.74
0.8
76.5
37
Minor 5ss
36.8
-1.5
3.3
49.4
47.1
Minor BPS
64.3
0.53
1.9
88.42
36.8

Associated Gene:

Gene:
TTC38
Ensembl Gene ID:
ENSAPLG00000010920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011412
69886004 - 69910334
24331