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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69900079_69901171_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69900079 - 69901171
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGACTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CCCTTTTTGACT
Flanking Amino Acid:
FDRAEKLALEALAIDQTDAW
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
75.1
33.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
79.7
0.67
0.9
73.3
36.2
Minor 5ss
34
-1.8
3.1
45.2
42.8
Minor BPS
62.1
0.46
1.3
69.33
42.7

Associated Gene:

Gene:
TTC38
Ensembl Gene ID:
ENSAPLG00000010920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011412
69886004 - 69910334
24331