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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69906922_69907914_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69906922 - 69907914
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
ATTTCTGTATTT
Flanking Amino Acid:
HVAALDMFAHGQLPKACDLW
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
78
0.63
0.9
70
40.5
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
52
0.14
2.2
77.64
39.7

Associated Gene:

Gene:
TTC38
Ensembl Gene ID:
ENSAPLG00000010920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011412
69886004 - 69910334
24331