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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69908087_69908451_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69908087 - 69908451
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTGGTTTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATGGCTCAAGT
Flanking Amino Acid:
SKLKAADPNFTMGQVIANGL
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
82.6
29.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
73.8
0.53
0.9
65.9
40.9
Minor 5ss
41.2
-1
2.8
53
39
Minor BPS
46.6
-0.1
2.3
69.11
47.4

Associated Gene:

Gene:
TTC38
Ensembl Gene ID:
ENSAPLG00000010920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011412
69886004 - 69910334
24331