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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69908534_69909145_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69908534 - 69909145
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
GATTCCTTGACA
Flanking Amino Acid:
CKLFDAVLTQYATWANDEGL
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.4
36.4
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
87.9
0.85
0.7
82.7
25.9
Minor 5ss
43.4
-0.7
2.8
56.4
47.7
Minor BPS
80.4
0.95
1.1
80.63
34.3

Associated Gene:

Gene:
TTC38
Ensembl Gene ID:
ENSAPLG00000010920
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011412
69886004 - 69910334
24331