About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69930775_69932707_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69930775 - 69932707
Intron Length:
1933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TCTTCTCTTACA
Flanking Amino Acid:
GQKPPNTRSIELLEDCYVMK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
74.4
36
Major BPS
74.8
0.62
1
67
39.8
Major PPT
89.2
0.88
0.6
83.8
24.5
Minor 5ss
37.3
-1.4
2.6
40.4
39.1
Minor BPS
55.8
0.17
2
71.87
40.1

Associated Gene:

Gene:
CDPF1
Ensembl Gene ID:
ENSAPLG00000017850
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045578
69919974 - 69938831
18858