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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69932820_69938383_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69932820 - 69938383
Intron Length:
5564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
LCGLSVCVGAECSLFYSKRF
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
64.6
40.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
35.2
-1.7
3.3
49.2
41.2
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
CDPF1
Ensembl Gene ID:
ENSAPLG00000017850
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045578
69919974 - 69938831
18858