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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69949481_69950070_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
69949481 - 69950070
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCGAGAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTCGAGAATA
Flanking Amino Acid:
LFVAAIICCGDRPGLVNVGH
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
56.7
0.15
1.1
51.9
41.6
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
46.5
-0.2
2.3
66.2
40.1

Associated Gene:

Gene:
PPARA
Ensembl Gene ID:
ENSAPLG00000010641
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011118
69949233 - 69961191
11959