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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69953774_69956667_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69953774 - 69956667
Intron Length:
2894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAAG
5'SS Class:
major
3'SS Sequence:
ATCTTCCTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TGTTTTACAATT
Flanking Amino Acid:
CDRNFGMSHNAIRFGRMPRS
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.6
41.3
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
76.3
0.59
0.9
75
34
Minor 5ss
33.8
-1.8
3
38.2
41.2
Minor BPS
50.8
0.1
1.8
73.39
37.8

Associated Gene:

Gene:
PPARA
Ensembl Gene ID:
ENSAPLG00000010641
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011118
69949233 - 69961191
11959