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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_700536_703834_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
700536 - 703834
Intron Length:
3299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACGTGG
5'SS Class:
major
3'SS Sequence:
TCCTCACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTCCTCACCT
Flanking Amino Acid:
SNVVFLELLARQFPGCGNIV
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
57.4
44.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.7
0.6
0.8
70
29.7
Minor 5ss
36.2
-1.6
3.3
46.8
48.5
Minor BPS
64.9
0.55
1.9
84.08
42.8

Associated Gene:

Gene:
SLC35B4
Ensembl Gene ID:
ENSAPLG00000005885
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006109
693025 - 703911
10887