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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70125238_70125850_R

Intron Information:

Intron Rank:
153132
Intron Class:
major
Intron Phase:
Intron Coordinates:
70125238 - 70125850
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.1
0.86
0.8
86
32.8
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036287
70125181 - 70126410
1230