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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70125238_70127758_R

Intron Information:

Intron Rank:
153130
Intron Class:
major
Intron Phase:
Intron Coordinates:
70125238 - 70127758
Intron Length:
2521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTATATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.1
0.86
0.8
86
32.8
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018848
70106652 - 70146436
39785