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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70454497_70482249_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70454497 - 70482249
Intron Length:
27753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACCCAT
U12 Branch Point Sequence:
CTTTCTGCAAAC
Flanking Amino Acid:
KTVFGQELRVGSREAAFTYA
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
55.7
0.14
1.2
64.4
33.7
Major PPT
81.3
0.71
0.7
76
26.2
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
46.6
-0.2
2.2
63.41
42.4

Associated Gene:

Gene:
WNT7B
Ensembl Gene ID:
ENSAPLG00000010597
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011034
70405765 - 70494895
89131