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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70642786_70649969_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70642786 - 70649969
Intron Length:
7184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCCA
5'SS Class:
major
3'SS Sequence:
CTTCTGATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTGATTAACA
Flanking Amino Acid:
VLYAKLSNQERVTLLELIMS
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
62.5
43.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.7
0.56
0.9
66.3
39.5
Minor 5ss
43.7
-0.7
2.9
57.8
46.4
Minor BPS
63.8
0.43
2
79.19
36.8

Associated Gene:

Gene:
ATXN10
Ensembl Gene ID:
ENSAPLG00000010420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010866
70585211 - 70693822
108612