About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7065761_7080461_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7065761 - 7080461
Intron Length:
14701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTCAC
5'SS Class:
major
3'SS Sequence:
GTTATCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTCCTTTAATA
Flanking Amino Acid:
LPDPVKGKECTFSCASGEYL
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
59
40.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75
0.56
0.9
66.1
40.7
Minor 5ss
42.8
-0.8
2.8
58.3
40.4
Minor BPS
80.4
0.95
1
84.67
28.2

Associated Gene:

Gene:
KIAA1324L
Ensembl Gene ID:
ENSAPLG00000009322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036801
7015411 - 7114789
99379
ENSAPLT00000029989
7065583 - 7113789
48207