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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70685470_70689530_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70685470 - 70689530
Intron Length:
4061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTTT
5'SS Class:
major
3'SS Sequence:
AATTTTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTCTTTATTT
Flanking Amino Acid:
VECAKNQDVMRNLGLITTSV
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
74.5
36.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.6
0.51
1
67.6
41.6
Minor 5ss
48.1
-0.2
3.2
72.7
44.5
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
ATXN10
Ensembl Gene ID:
ENSAPLG00000010420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040699
70585211 - 70693822
108612
ENSAPLT00000010866
70585211 - 70693822
108612