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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70769083_70776623_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70769083 - 70776623
Intron Length:
7541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTGTTCTCACTT
Flanking Amino Acid:
CPENYRKSGDTRCERLPCNE
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.2
84.4
33.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86.5
0.82
0.7
81.1
30.1
Minor 5ss
39.8
-1.1
2.8
52.2
37.4
Minor BPS
49.7
0.06
1.8
68.17
43.3

Associated Gene:

Gene:
FBLN1
Ensembl Gene ID:
ENSAPLG00000010087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033236
70768728 - 70803660
34933