About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70777422_70778309_R


Intron Information:

Intron Rank:
14

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
70777422 - 70778309

Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGAACT

5'SS Class:
strong_major

3'SS Sequence:
TTTCCTCTTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TAGTAAA

U12 Branch Point Sequence:
ACATAGTAAATT

Flanking Amino Acid:
LSDIDGISCEDIDECALPTG

Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
93.1
1.02
0.7
87.2
27

Major BPS
67.4
0.43
1.1
67.9
36.3

Major PPT
89.6
0.89
0.6
84.7
22.9

Minor 5ss
36.1
-1.6
3
50.2
45.8

Minor BPS
42.9
-0.4
2.3
59.69
44

Associated Gene:

Gene:
FBLN1

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

70768728 - 70803660
34933

70739552 - 70827792
88241