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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70787078_70789352_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70787078 - 70789352
Intron Length:
2275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
AATTTCCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTTCTTAAAAT
Flanking Amino Acid:
EDPYLHDGCRGGGPCSQQCR
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62.7
0.29
1
61.7
39.3
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
59.3
0.37
1.8
75.14
41.9

Associated Gene:

Gene:
FBLN1
Ensembl Gene ID:
ENSAPLG00000010087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010574
70739552 - 70827792
88241