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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70791981_70803486_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70791981 - 70803486
Intron Length:
11506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAACA
Flanking Amino Acid:
NSTCEAEYFQKCCHCCLLGK
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.5
0.64
1
74.1
39.5
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
75.7
0.8
1.4
82.86
31

Associated Gene:

Gene:
FBLN1
Ensembl Gene ID:
ENSAPLG00000010087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033236
70768728 - 70803660
34933
ENSAPLT00000010574
70739552 - 70827792
88241