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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70803623_70811326_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70803623 - 70811326
Intron Length:
7704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGAT
5'SS Class:
major
3'SS Sequence:
ACCCTCTTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACGTTCTTAACC
Flanking Amino Acid:
LPLISESRECSMTQVQCCRS
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.4
32.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.6
0.49
0.9
69.9
34.5
Minor 5ss
39.8
-1.1
3.3
57.3
47.4
Minor BPS
73.5
0.72
1.2
71.97
39.5

Associated Gene:

Gene:
FBLN1
Ensembl Gene ID:
ENSAPLG00000010087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010574
70739552 - 70827792
88241