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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70811427_70825629_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70811427 - 70825629
Intron Length:
14203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCACTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTTTCCTCACTT
Flanking Amino Acid:
ALLPPALRGQDLSMEECCDK
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.6
0.64
0.8
72.6
32
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
60.8
0.42
1.9
79.83
42.7

Associated Gene:

Gene:
FBLN1
Ensembl Gene ID:
ENSAPLG00000010087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010574
70739552 - 70827792
88241