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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7081823_7084526_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7081823 - 7084526
Intron Length:
2704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
TTTTAACTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACT
Flanking Amino Acid:
IDNNIFFEFFIQNDQCKEME
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
61.7
42.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.3
0.59
1
71.1
38.4
Minor 5ss
36
-1.6
3.5
55
43.2
Minor BPS
72.4
0.78
1.3
83.79
37.4

Associated Gene:

Gene:
KIAA1324L
Ensembl Gene ID:
ENSAPLG00000009322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029989
7065583 - 7113789
48207
ENSAPLT00000009758
7080301 - 7113789
33489
ENSAPLT00000036801
7015411 - 7114789
99379