Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70871659_70872600_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

70871659 - 70872600

Intron Length:

942

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTGTTATTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TTTTTGTTATTG

Flanking Amino Acid:

NAELSQEQKSKNIYLKEEEY

Intron Amino Acid Position:

356

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

77.6

32.3

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

71.6

0.49

66.7

44.2

Minor 5ss

35.7

-1.6

3.2

45.3

36.6

Minor BPS

49.8

-0.1

2.3

66.23

42.5

Associated Gene:

Gene:

RIBC2

Ensembl Gene ID:

ENSAPLG00000009727

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010126

70871352 - 70885952

14601